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| Draw domain graph | Compare domain graphs | Phylogenetic profiling | Withdraw proteins |
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Short introduction:
CADO is a web server
that allows users to visualize the protein domain organization in a given
organism and compare domain organizations among different organisms. In the
language of CADO, the organization of protein domains in a given organism is
shown as a domain graph (demon)
in which protein domains are represented as vertices
and domain combinations, i.e. instances of two domains found in one protein,
are represented as edges. CADO provides a simple way to study the function of
domains based on their relations shown in the topology of domain graph,
and a new way to analyze and compare whole proteomes in terms of domain organization
(demon).
Database: New! CADO has a built-in database of protein domain predictions (based on Pfam 20.0) of 1 (including 0 archaeal, 0 bacterial and 0 eukaryotic) genomes. [Genome list] [Domain list] Citation: Genome Research, 14:343-353, 2004 [Supplementary material to the paper]
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