- "CAREER: Computational Protein Function Annotation for Metagenomics", NSF DBI-0845685, $520,810, 9/15/2009-8/31/2014
- "Fragment Assembly and Metabolic/Species Diversity Analysis for the Human Microbiome" NIH 1R01HG004908-01 , $770,000, 09/26/2008-07/31/2012. See the news release at NIH; see related news at GenomeWeb

Funding